is there excessive slop in the drive train/mechanisms that would be able to cause a slight timing issue? on some high hour engines i have worked on, there was enough play in the timing gear train that you could install an injection pump and have it perfectly timed, but if you rolled the engine over 720 degrees the timeing would be late and you'd have adjust the timing to get it exact.
The coupler may be on a spline that you could relocate. Much easier to do that than pull the timing cover.